SNRPEP6

RNA expression — cross-omics
Cross-omicsRNA → FUNCTION-RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, SNRPEP6 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,090 significant associations in total. SKCM shows the largest number of these associations.

The most reproducible SNRPEP6-associated GO terms across cancer lineages are Ribosomal large subunit assembly, Maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA), and Maturation of SSU-rRNA. Each is linked with SNRPEP6 in more than 14 cancer types. Because this analysis shows association rather than direction, both SNRPEP6-to-partner and partner-to-SNRPEP6 results are reported.

Each partner links to its own Q-omics profile.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (SNRPEP6→partner) and Y-score (partner→SNRPEP6) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner GO termX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
STADRibosomal large subunit assembly →+0.046+0.191<.001<.001314
TGCTMaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) →+0.052+0.381<.001<.001314
TGCTMaturation of SSU-rRNA →+0.046+0.305<.001.001115
TGCT7-methylguanosine cap hypermethylation →+0.065+0.337<.001<.001313
STADRibosome assembly →+0.051+0.199<.001<.001313
TGCTRibosomal small subunit biogenesis →+0.043+0.390<.001<.001214
Each partner links to its Q-omics profile. Showing the 6 strongest of 6,090 associations by consensus.

Exploration