SNRPD2

Across TCGA cell cohorts, SNRPD2 RNA expression is significantly associated with the go_rna of many other GO terms, with 3,113 significant associations in total. BONE shows the largest number of these associations.

The most reproducible SNRPD2-associated GO terms across cancer lineages are U4 snRNA 3'-end processing, DNA strand elongation involved in DNA replication, and Termination of RNA polymerase I transcription. Each is linked with SNRPD2 in more than 11 cancer types. Because this analysis shows association rather than direction, both SNRPD2-to-partner and partner-to-SNRPD2 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, U4 snRNA 3'-end processing grouped by SNRPD2-low versus SNRPD2-high in LUNG_NSCLC_LUAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (SNRPD2→partner) and Y-score (partner→SNRPD2) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LUNG_NSCLC_LUAD	U4 snRNA 3'-end processing →	+0.126	+0.713	<.001	<.001	3	12
BLOOD_Myeloma	DNA strand elongation involved in DNA replication →	+0.138	+0.683	.001	.001	3	11
LUNG_NSCLC_LUSC	Termination of RNA polymerase I transcription →	+0.120	+0.623	<.001	<.001	3	11
URINARY_TRACT	Maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) →	+0.140	+0.651	<.001	<.001	3	11
LARGE_INTESTINE	Response to endoplasmic reticulum stress →	-0.051	-0.577	<.001	<.001	3	11
LARGE_INTESTINE	Cell junction assembly →	-0.060	-0.664	.002	<.001	3	11

Each partner links to its Q-omics profile. Showing the 6 strongest of 3,113 associations by consensus.

U4 snRNA 3'-end processing by SNRPD2 expression — LUNG_NSCLC_LUAD

Explore this box plot interactively →