SMG8

mass-spec protein — tumor vs normal
Tumor vs Normalmass-specBox plot · TCGA cohorts

Across TCGA pan-cancer cohorts, SMG8 mass-spec protein differs between tumor and matched normal tissue in 6 of 18 cancer types tested, making tumor–normal expression one of SMG8’s most consistent transcriptional readouts.

The strongest signal is observed in clear cell renal cell carcinoma (CCRCC), where SMG8 mass-spec protein is more highly expressed in tumor relative to normal tissue. In most cancer types SMG8 is over-expressed in tumor.

CCRCC, HNSC, and LSCC are the cancer types where SMG8 tumor–normal differential expression is most reproducible.

mass-spec protein tumor vs normal associations by lineage

Ranked by sampling consensus. Fold-change is the tumor-versus-normal difference in SMG8 mass-spec protein (log2); positive values indicate higher expression in tumor. p-values are from the differential-expression test.
LineageGenderStageFold-changepSampling consensus
CCRCCFemaleIII,IV+0.473<.00112view →
HNSCMaleIV+0.348<.00111view →
LSCCMaleII,III,IV+0.508<.0019view →
LUADMaleIII,IV+0.335<.0019view →
COADAllIII,IV+0.324.0076view →
OVAllAll+0.286.0422view →
Pink = over-expressed in tumor, green = repressed in tumor. Showing the 6 strongest of 6 lineages.

SMG8–CCRCC

Tumor-vs-normal mass-spec protein box plot for SMG8 in CCRCC.

Open the CCRCC breakdown →

Exploration