SLC7A1

mutation — cross-omics
Cross-omicsMUTATION → RNACell-linePairwise association · TCGA cohorts

Across TCGA cell cohorts, SLC7A1 mutation is significantly associated with the RNA expression of many other genes, with 8 significant associations in total. LARGE_INTESTINE shows the largest number of these associations.

The most reproducible SLC7A1-associated genes across cancer lineages are OR52H1, TAFA1, and PFN3. Each is linked with SLC7A1 in more than 1 cancer types. Because this analysis shows association rather than direction, both SLC7A1-to-partner and partner-to-SLC7A1 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, OR52H1 grouped by SLC7A1-low versus SLC7A1-high in LARGE_INTESTINE.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (SLC7A1→partner) and Y-score (partner→SLC7A1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LARGE_INTESTINEOR52H1 →+0.022+3.084<.001.00231
LARGE_INTESTINETAFA1 →+0.205+2.688.004.00831
LARGE_INTESTINEPFN3 →+0.091+2.882<.001.00531
BLOOD_LeukemiaKRTAP21-2 →+0.062+4.539.001.00731
BLOOD_LeukemiaLYPD2 →+0.068+4.152.001.00931
BLOOD_LeukemiaFAM24A →+0.061+4.969<.001.00331
Each partner links to its Q-omics profile. Showing the 6 strongest of 8 associations by consensus.

OR52H1 by SLC7A1 expression — LARGE_INTESTINE

Box plot of OR52H1 in SLC7A1-low vs SLC7A1-high samples in LARGE_INTESTINE.

Explore this box plot interactively →

Exploration