SLC6A3

Across TCGA cell cohorts, SLC6A3 RNA expression is significantly associated with the RNA expression of many other genes, with 2,820 significant associations in total. LUNG_SCLC shows the largest number of these associations.

The most reproducible SLC6A3-associated genes across cancer lineages are CHST12, LPCAT1, and OCRL. Each is linked with SLC6A3 in more than 4 cancer types. Because this analysis shows association rather than direction, both SLC6A3-to-partner and partner-to-SLC6A3 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, SLC6A3 versus CHST12 in UPPER_AERODIGESTIVE_TRACT, with a Pearson correlation of 0.45.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (SLC6A3→partner) and Y-score (partner→SLC6A3) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UPPER_AERODIGESTIVE_TRACT	CHST12 →	+0.923	+0.060	<.001	<.001	3	3
KIDNEY	LPCAT1 →	+1.527	+1.657	<.001	.007	1	5
LUNG_SCLC	OCRL →	+0.711	+1.801	<.001	.001	3	2
SOFT_TISSUE	C5orf38 →	+1.547	+0.560	.005	.002	3	2
LARGE_INTESTINE	HDAC4 →	+0.868	+0.048	<.001	.001	3	2
UPPER_AERODIGESTIVE_TRACT	MYO1F →	+0.591	+0.073	<.001	.003	3	2

Each partner links to its Q-omics profile. Showing the 6 strongest of 2,820 associations by consensus.

SLC6A3 vs CHST12 — UPPER_AERODIGESTIVE_TRACT

Explore this scatter interactively →