SLC39A1

protein abundance — cross-omics
Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, SLC39A1 protein abundance is significantly associated with the RNA expression of many other genes, with 1,129 significant associations in total. OV shows the largest number of these associations.

The most reproducible SLC39A1-associated genes across cancer lineages are MIR503HG, RAB3GAP2, and RABL3. Each is linked with SLC39A1 in more than 1 cancer types. Because this analysis shows association rather than direction, both SLC39A1-to-partner and partner-to-SLC39A1 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, SLC39A1 versus MIR503HG in OV, with a Pearson correlation of 0.40.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (SLC39A1→partner) and Y-score (partner→SLC39A1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
OVMIR503HG →+1.112+0.529.002<.00132
LSCCRAB3GAP2 →-0.472-0.366<.001.00132
LSCCRABL3 →-0.629-0.449.002.00132
LSCCEDDM3B →-0.387-0.469<.001<.00132
OVPTK6 →-1.266-0.611.007.00131
OVCDH20 →+1.200+0.429.005.00531
Each partner links to its Q-omics profile. Showing the 6 strongest of 1,129 associations by consensus.

SLC39A1 vs MIR503HG — OV

Per-sample scatter of SLC39A1 vs MIR503HG in OV (Pearson r = 0.40).

Explore this scatter interactively →

Exploration