SLC23A1

mutation — cross-omics
Cross-omicsMUTATION → RNACell-linePairwise association · TCGA cohorts

Across TCGA cell cohorts, SLC23A1 mutation is significantly associated with the RNA expression of many other genes, with 62 significant associations in total. BLOOD_Leukemia shows the largest number of these associations.

The most reproducible SLC23A1-associated genes across cancer lineages are C1QTNF7, PDCL2, and WDR87. Each is linked with SLC23A1 in more than 1 cancer types. Because this analysis shows association rather than direction, both SLC23A1-to-partner and partner-to-SLC23A1 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, C1QTNF7 grouped by SLC23A1-low versus SLC23A1-high in LARGE_INTESTINE.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (SLC23A1→partner) and Y-score (partner→SLC23A1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LARGE_INTESTINEC1QTNF7 →+0.106+3.938<.001<.00131
LARGE_INTESTINEPDCL2 →+0.212+3.292<.001.00631
LARGE_INTESTINEWDR87 →+0.016+2.716.002.00931
BLOOD_LeukemiaGML →+0.090+3.567<.001.00331
BLOOD_LeukemiaUCP1 →+0.159+4.321.006.00131
BLOOD_LeukemiaIL2 →+0.657+3.691<.001.00231
Each partner links to its Q-omics profile. Showing the 6 strongest of 62 associations by consensus.

C1QTNF7 by SLC23A1 expression — LARGE_INTESTINE

Box plot of C1QTNF7 in SLC23A1-low vs SLC23A1-high samples in LARGE_INTESTINE.

Explore this box plot interactively →

Exploration