SCARNA3

Across TCGA patient cohorts, SCARNA3 RNA expression is significantly associated with the protein abundance of many other proteins, with 9,180 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible SCARNA3-associated proteins across cancer lineages are C1orf35, TPR, and ZMYND8. Each is linked with SCARNA3 in more than 4 cancer types. Because this analysis shows association rather than direction, both SCARNA3-to-partner and partner-to-SCARNA3 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, SCARNA3 versus C1orf35 in GBM, with a Pearson correlation of 0.33.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (SCARNA3→partner) and Y-score (partner→SCARNA3) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	C1orf35 →	+0.376	+0.342	.004	.002	3	5
GBM	TPR →	+0.218	+0.379	.001	.002	3	5
GBM	ZMYND8 →	+0.275	+0.470	<.001	<.001	3	4
GBM	GATAD2B →	+0.436	+0.525	<.001	<.001	3	4
GBM	IRF2BP2 →	+0.230	+0.439	<.001	<.001	2	5
GBM	SIN3B →	+0.279	+0.500	<.001	<.001	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest of 9,180 associations by consensus.

SCARNA3 vs C1orf35 — GBM

Explore this scatter interactively →