SCARNA21

Across TCGA patient cohorts, SCARNA21 RNA expression is significantly associated with the protein abundance of many other proteins, with 10,907 significant associations in total. LUAD shows the largest number of these associations.

The most reproducible SCARNA21-associated proteins across cancer lineages are CHD3_T1569, HDGFL3, and CHD3. Each is linked with SCARNA21 in more than 5 cancer types. Because this analysis shows association rather than direction, both SCARNA21-to-partner and partner-to-SCARNA21 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, SCARNA21 versus CHD3_T1569 in OV, with a Pearson correlation of 0.35.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (SCARNA21→partner) and Y-score (partner→SCARNA21) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
OV	CHD3_T1569 →	+0.789	+0.681	<.001	.005	3	6
LUAD	HDGFL3 →	+0.508	+0.571	<.001	<.001	3	5
GBM	CHD3 →	+0.369	+0.533	<.001	<.001	3	5
PDAC	SLC38A1_S49 →	-0.738	-0.424	<.001	.005	3	4
LSCC	HDGFL3_S162 →	+0.719	+0.291	.005	.001	3	4
LSCC	AGO1 →	+0.225	+0.403	.001	.005	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest of 10,907 associations by consensus.

SCARNA21 vs CHD3_T1569 — OV

Explore this scatter interactively →