SCARNA20

Across TCGA patient cohorts, SCARNA20 RNA expression is significantly associated with the protein abundance of many other proteins, with 8,182 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible SCARNA20-associated proteins across cancer lineages are BPTF, EFTUD2, and USP39. Each is linked with SCARNA20 in more than 3 cancer types. Because this analysis shows association rather than direction, both SCARNA20-to-partner and partner-to-SCARNA20 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, SCARNA20 versus BPTF in LSCC, with a Pearson correlation of 0.41.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (SCARNA20→partner) and Y-score (partner→SCARNA20) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LSCC	BPTF →	+0.283	+0.528	<.001	<.001	3	4
LSCC	EFTUD2 →	+0.252	+0.713	<.001	<.001	3	4
LSCC	USP39 →	+0.326	+0.746	<.001	<.001	3	4
LSCC	GTF3C1 →	+0.269	+0.512	<.001	.002	3	4
GBM	HNRNPLL →	+0.197	+0.419	.001	<.001	3	4
LSCC	RBM42 →	+0.230	+0.528	<.001	<.001	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest of 8,182 associations by consensus.

SCARNA20 vs BPTF — LSCC

Explore this scatter interactively →