SCARNA20

Across TCGA patient cohorts, SCARNA20 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,675 significant associations in total. STAD shows the largest number of these associations.

The most reproducible SCARNA20-associated GO terms across cancer lineages are Macromolecule deacylation, Obsolete regulation of histone modification, and Regulation of protein neddylation. Each is linked with SCARNA20 in more than 16 cancer types. Because this analysis shows association rather than direction, both SCARNA20-to-partner and partner-to-SCARNA20 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Macromolecule deacylation grouped by SCARNA20-low versus SCARNA20-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (SCARNA20→partner) and Y-score (partner→SCARNA20) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Macromolecule deacylation →	+0.050	+0.469	<.001	<.001	3	17
STAD	Obsolete regulation of histone modification →	+0.052	+0.521	<.001	<.001	3	17
STAD	Regulation of protein neddylation →	+0.063	+0.573	<.001	<.001	3	17
STAD	Positive regulation of double-strand break repair →	+0.055	+0.557	<.001	<.001	3	17
STAD	Nucleotide-excision repair →	+0.053	+0.612	<.001	<.001	3	17
STAD	Internal protein amino acid acetylation →	+0.056	+0.568	<.001	<.001	3	17

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,675 associations by consensus.

Macromolecule deacylation by SCARNA20 expression — STAD

Explore this box plot interactively →