Across TCGA patient cohorts, SCARNA12 RNA expression is significantly associated with the go_rna of many other GO terms, with 7,112 significant associations in total. KIRC shows the largest number of these associations.

The most reproducible SCARNA12-associated GO terms across cancer lineages are Regulation of DNA-directed DNA polymerase activity, Regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, and Base-excision repair, gap-filling. Each is linked with SCARNA12 in more than 29 cancer types. Because this analysis shows association rather than direction, both SCARNA12-to-partner and partner-to-SCARNA12 results are reported.

Each partner links to its own Q-omics profile.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (SCARNA12→partner) and Y-score (partner→SCARNA12) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LUSC	Regulation of DNA-directed DNA polymerase activity →	+0.070	+0.847	<.001	<.001	3	30
KIRC	Regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay →	+0.051	+0.678	<.001	<.001	3	27
ESCA	Base-excision repair, gap-filling →	+0.058	+0.593	<.001	<.001	3	27
ESCA	DNA-templated transcription termination →	+0.049	+0.426	.001	<.001	3	27
ESCA	Establishment of protein localization to mitochondrial membrane →	+0.066	+0.521	<.001	<.001	3	27
ESCA	Positive regulation of DNA repair →	+0.053	+0.542	.001	<.001	3	27

Each partner links to its Q-omics profile. Showing the 6 strongest of 7,112 associations by consensus.

Exploration

SCARNA12 survival (RNA) · tumor vs normal (RNA) · all SCARNA12 data types