SCAPER

Across TCGA cell cohorts, SCAPER RNA expression is significantly associated with the RNA expression of many other genes, with 11,965 significant associations in total. BLOOD_Leukemia shows the largest number of these associations.

The most reproducible SCAPER-associated genes across cancer lineages are IREB2, FEM1B, and HMG20A. Each is linked with SCAPER in more than 17 cancer types. Because this analysis shows association rather than direction, both SCAPER-to-partner and partner-to-SCAPER results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, SCAPER versus IREB2 in OESOPHAGUS, with a Pearson correlation of 0.80.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (SCAPER→partner) and Y-score (partner→SCAPER) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
OESOPHAGUS	IREB2 →	+1.460	+1.198	<.001	<.001	3	18
LUNG_SCLC	FEM1B →	+1.007	+1.120	<.001	<.001	3	15
OESOPHAGUS	HMG20A →	+1.338	+1.286	<.001	<.001	3	14
LUNG_NSCLC_LUSC	FAM219B →	+1.029	+0.567	.002	.001	3	14
OVARY	ELF2 →	+0.817	+0.799	<.001	<.001	3	13
STOMACH	N4BP2 →	+1.162	+1.039	<.001	<.001	1	15

Each partner links to its Q-omics profile. Showing the 6 strongest of 11,965 associations by consensus.

SCAPER vs IREB2 — OESOPHAGUS

Explore this scatter interactively →