SCAPER

Across TCGA cell cohorts, SCAPER RNA expression is significantly associated with the go_rna of many other GO terms, with 4,776 significant associations in total. BLOOD_Leukemia shows the largest number of these associations.

The most reproducible SCAPER-associated GO terms across cancer lineages are Post-Golgi vesicle-mediated transport, Epigenetic regulation of gene expression, and Golgi vesicle transport. Each is linked with SCAPER in more than 13 cancer types. Because this analysis shows association rather than direction, both SCAPER-to-partner and partner-to-SCAPER results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Post-Golgi vesicle-mediated transport grouped by SCAPER-low versus SCAPER-high in URINARY_TRACT.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (SCAPER→partner) and Y-score (partner→SCAPER) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
URINARY_TRACT	Post-Golgi vesicle-mediated transport →	+0.058	+0.862	<.001	<.001	3	13
BONE	Epigenetic regulation of gene expression →	+0.058	+0.684	.005	.003	2	14
PANCREAS	Golgi vesicle transport →	+0.051	+0.592	.004	.007	2	13
BREAST	Positive regulation of cilium assembly →	+0.117	+0.910	<.001	<.001	3	12
BONE	Positive regulation of DNA repair →	+0.072	+0.759	.002	<.001	3	12
OVARY	Negative regulation of gene expression, epigenetic →	+0.050	+0.602	<.001	<.001	3	12

Each partner links to its Q-omics profile. Showing the 6 strongest of 4,776 associations by consensus.

Post-Golgi vesicle-mediated transport by SCAPER expression — URINARY_TRACT

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