RUNX3-AS1

associated omics data
RUNX3 antisense RNA 1Genealiases: []

Q-omics provides the consensus-scored RUNX3-AS1 profile across patient tissues and cancer cell-line models. RUNX3-AS1 expression is associated with patient survival in 22 of 34 cancer types, with the highest sampling consensus in ACC. Among the 18 cancer types available for tumor–normal comparison, RUNX3-AS1 is differentially expressed in 9, with the highest sampling consensus in HNSC. Additionally, RUNX3-AS1 RNA expression shows 14,691 significant gene co-expression associations, with the highest sampling consensus in DLBC. Together, these results highlight ACC, HNSC, and DLBC as cancer lineages where RUNX3-AS1 shows reproducible signals across survival, tumor–normal expression, and patient cross-omics analyses.

Every result is evaluated using two consensus scores. Sampling consensus measures how consistently a finding is reproduced within a cancer lineage across different conditions. Lineage consensus measures how broadly the result is shared across cancer types, distinguishing pan-cancer signals from lineage-specific patterns.

Survival associations

This table summarizes RUNX3-AS1 survival associations across molecular data types. RUNX3-AS1 RNA expression shows survival associations in the most cancer types (22). The rightmost column indicates the cancer type with the highest sampling consensus for each molecular layer.
RUNX3-AS1 data typeSurvival analysisLineage consensusLineage of highest sampling consensus
RNAKaplan–Meier22ACC (90)view →
This table ranks reproducible RUNX3-AS1 RNA expression–survival associations across cancer types. High RUNX3-AS1 expression shows unfavorable associations in ACC, KIRC, THCA, LGG and UCS, but favorable associations in CESC. The ACC Kaplan–Meier curve shows clear separation, with the high-expression group declining faster, consistent with the unfavorable association (log-rank p < 0.001). Together, the overview and detailed table identify ACC as the clearest survival context for RUNX3-AS1 RNA expression.
LineageMeasureSplitStageAUC1
high
AUC2
low
pSampling consensus
ACCDFSQuartileAll0.2510.664<.00190view →
KIRCDFSMedianAll0.5480.699<.00182view →
THCAOSQuartileAll0.9781.000.00147view →
LGGDFSMedianAll0.3200.462<.00142view →
CESCDFSMedianIV0.7360.255.00128view →
UCSOSMedianIV0.3020.817.00224view →
Pink = unfavorable, green = favorable. all 22 lineages →

RUNX3-AS1-ACC (DFS)

Kaplan–Meier survival curve for RUNX3-AS1 RNA expression in ACC: high vs low expression groups.

Explore this curve interactively →

Tumor vs Normal expression

This table summarizes RUNX3-AS1 tumor–normal expression differences by data type. RNA shows broader differences across cancer types, with a lineage consensus of 9. The strongest signals are observed in HNSC for RNA.
RUNX3-AS1 data typeExpression analysisLineage consensusLineage of highest sampling consensus
RNABox plot9HNSC (12)view →
This table ranks reproducible tumor–normal expression differences for RUNX3-AS1. A negative fold-change indicates higher expression in normal tissue than in tumor tissue. RUNX3-AS1 shows lower tumor expression in BRCA and higher tumor expression in HNSC, KIRC, LUAD, LUSC and STAD. The HNSC box plot shows higher RUNX3-AS1 RNA expression in tumor versus normal tissue (log2 FC = +0.403, t-test p < 0.001).
LineageGenderStageFold-changepSampling consensus
HNSCAllIV+0.403<.00112view →
KIRCMaleAll+0.285<.00111view →
LUADFemaleAll+0.712<.0019view →
BRCAFemaleAll−0.243<.0018view →
LUSCMaleAll+0.545<.0017view →
STADAllII,III,IV+0.372<.0017view →
Green = repressed in tumor. all 9 lineages →

RUNX3-AS1-HNSC

Tumor-vs-normal expression box plot for RUNX3-AS1 in HNSC.

Explore this plot interactively →

Cross-omics associations

This table shows molecular features associated with RUNX3-AS1 in patient tissues and cancer cell lines. In patient samples, RUNX3-AS1 shows the broadest associations at the RNA and protein expression levels, with DLBC recurring as the lineage with the largest associated feature set.
Associated data typeStrength (# associated data)Lineage of highest associated data
RNA
RNA14,691DLBC (5729)view →
Protein (mass-spec)12,083LSCC (3390)view →