RNU6ATAC39P

Across TCGA patient cohorts, RNU6ATAC39P RNA expression is significantly associated with the RNA expression of many other genes, with 8,782 significant associations in total. THYM shows the largest number of these associations.

The most reproducible RNU6ATAC39P-associated genes across cancer lineages are RNU4-62P, MIR548AA2, and RPS23P6. Each is linked with RNU6ATAC39P in more than 27 cancer types. Because this analysis shows association rather than direction, both RNU6ATAC39P-to-partner and partner-to-RNU6ATAC39P results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, RNU6ATAC39P versus RNU4-62P in KIRP, with a Pearson correlation of 0.56.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (RNU6ATAC39P→partner) and Y-score (partner→RNU6ATAC39P) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
KIRP	RNU4-62P →	+1.425	+0.308	<.001	<.001	3	28
KIRC	MIR548AA2 →	+1.232	+0.517	<.001	<.001	3	26
KIRP	RPS23P6 →	+1.308	+0.291	<.001	<.001	3	26
STAD	RNU1-67P →	+0.731	+0.660	<.001	<.001	3	25
THYM	SEC24C →	-1.390	-0.552	<.001	<.001	3	24
UCEC	RN7SL180P →	+0.654	+0.310	<.001	<.001	3	24

Each partner links to its Q-omics profile. Showing the 6 strongest of 8,782 associations by consensus.

RNU6ATAC39P vs RNU4-62P — KIRP

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