Across TCGA pan-cancer cohorts, RNU5E-4P RNA differs between tumor and matched normal tissue in 6 of 18 cancer types tested, making tumor–normal expression one of RNU5E-4P’s most consistent transcriptional readouts.
The strongest signal is observed in thyroid carcinoma (THCA), where RNU5E-4P RNA is repressed in tumor relative to normal tissue. In most cancer types RNU5E-4P is over-expressed in tumor, although a few such as THCA and HNSC show the opposite, repressed pattern.
THCA, HNSC, and PAAD are the cancer types where RNU5E-4P tumor–normal differential expression is most reproducible.
RNA tumor vs normal associations by lineage
Ranked by sampling consensus. Fold-change is the tumor-versus-normal difference in RNU5E-4P RNA (log2); positive values indicate higher expression in tumor. p-values are from the differential-expression test.