RNF38

protein abundance — cross-omics
Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNF38 protein abundance is significantly associated with the RNA expression of many other genes, with 3,668 significant associations in total. HNSC shows the largest number of these associations.

The most reproducible RNF38-associated genes across cancer lineages are IL11RA, CEP85L, and SARDH. Each is linked with RNF38 in more than 2 cancer types. Because this analysis shows association rather than direction, both RNF38-to-partner and partner-to-RNF38 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, RNF38 versus IL11RA in UCEC, with a Pearson correlation of -0.52.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (RNF38→partner) and Y-score (partner→RNF38) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
UCECIL11RA →-0.718-0.524.006<.00133
UCECCEP85L →-0.707-0.471.004<.00132
UCECSARDH →-1.093-0.444.007.00232
HNSCQRICH2 →-0.785-0.394.004.00732
UCECLEF1 →-2.091-0.515.003.00232
UCECADAMTS18 →-1.471-0.491.004<.00132
Each partner links to its Q-omics profile. Showing the 6 strongest of 3,668 associations by consensus.

RNF38 vs IL11RA — UCEC

Per-sample scatter of RNF38 vs IL11RA in UCEC (Pearson r = -0.52).

Explore this scatter interactively →

Exploration