RNF111

protein abundance — cross-omics
Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RNF111 protein abundance is significantly associated with the RNA expression of many other genes, with 556 significant associations in total. BRCA shows the largest number of these associations.

The most reproducible RNF111-associated genes across cancer lineages are TGM5, PTPMT1, and DAO. Each is linked with RNF111 in more than 1 cancer types. Because this analysis shows association rather than direction, both RNF111-to-partner and partner-to-RNF111 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, RNF111 versus TGM5 in LSCC, with a Pearson correlation of 0.56.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (RNF111→partner) and Y-score (partner→RNF111) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LSCCTGM5 →+1.111+0.447<.001<.00131
LSCCPTPMT1 →-0.396-0.338.006.00731
LSCCDAO →-0.058-0.377.009.00431
LSCCARRDC4 →+0.700+0.339.004.00331
LSCCHORMAD1 →+1.958+0.313<.001.00131
LSCCSNTG1 →-0.021-0.375.008<.00131
Each partner links to its Q-omics profile. Showing the 6 strongest of 556 associations by consensus.

RNF111 vs TGM5 — LSCC

Per-sample scatter of RNF111 vs TGM5 in LSCC (Pearson r = 0.56).

Explore this scatter interactively →

Exploration