RNA5SP417

Across TCGA patient cohorts, RNA5SP417 RNA expression is significantly associated with the mutation status of many other genes, with 7,985 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible RNA5SP417-associated genes across cancer lineages are PRDM14, GABRA4, and ST3GAL3. Each is linked with RNA5SP417 in more than 2 cancer types. Because this analysis shows association rather than direction, both RNA5SP417-to-partner and partner-to-RNA5SP417 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, PRDM14 grouped by RNA5SP417-low versus RNA5SP417-high in STAD.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (RNA5SP417→partner) and Y-score (partner→RNA5SP417) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	PRDM14 →	+4.485	+0.259	.007	<.001	3	3
LUSC	GABRA4 →	+3.297	+0.378	.005	<.001	3	3
LUSC	ST3GAL3 →	+5.882	+1.676	.002	<.001	3	3
LUSC	SEC14L4 →	+4.882	+0.970	.005	<.001	3	3
LUSC	SCN7A →	+2.560	+0.358	.005	<.001	3	3
LUSC	ADAMTS17 →	+3.660	+0.555	.003	<.001	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest of 7,985 associations by consensus.

PRDM14 by RNA5SP417 expression — STAD

Explore this box plot interactively →