RN7SL539P

Across TCGA patient cohorts, RN7SL539P RNA expression is significantly associated with the mutation status of many other genes, with 68 significant associations in total. BRCA shows the largest number of these associations.

The most reproducible RN7SL539P-associated genes across cancer lineages are PATL1, SPP2, and SEPTIN3. Each is linked with RN7SL539P in more than 1 cancer types. Because this analysis shows association rather than direction, both RN7SL539P-to-partner and partner-to-RN7SL539P results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, PATL1 grouped by RN7SL539P-low versus RN7SL539P-high in BRCA.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (RN7SL539P→partner) and Y-score (partner→RN7SL539P) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BRCA	PATL1 →	+8.471	+0.079	.005	<.001	3	2
BRCA	SPP2 →	+8.471	+0.114	.005	<.001	3	2
BRCA	SEPTIN3 →	+7.471	+0.052	.008	<.001	3	1
BRCA	KCNA7 →	+7.471	+0.052	.008	<.001	3	1
BRCA	CCNE1 →	+7.471	+0.052	.008	<.001	3	1
BRCA	PPP3CB →	+8.471	+0.114	.005	<.001	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 68 associations by consensus.

PATL1 by RN7SL539P expression — BRCA

Explore this box plot interactively →