RN7SKP88

RNA expression — cross-omics
Cross-omicsRNA → MUTATIONPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, RN7SKP88 RNA expression is significantly associated with the mutation status of many other genes, with 52 significant associations in total. STAD shows the largest number of these associations.

The most reproducible RN7SKP88-associated genes across cancer lineages are AKT1, RPS16, and ERCC1. Each is linked with RN7SKP88 in more than 1 cancer types. Because this analysis shows association rather than direction, both RN7SKP88-to-partner and partner-to-RN7SKP88 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, AKT1 grouped by RN7SKP88-low versus RN7SKP88-high in PRAD.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (RN7SKP88→partner) and Y-score (partner→RN7SKP88) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
PRADAKT1 →+7.939+0.134.008<.00132
BRCARPS16 →+9.057+0.134.003<.00131
BRCAERCC1 →+7.473+0.069.007<.00131
BRCAISG20L2 →+8.057+0.089.005<.00131
BRCATNFAIP8 →+8.057+0.089.005<.00131
BRCASHC3 →+9.057+0.134.003<.00131
Each partner links to its Q-omics profile. Showing the 6 strongest of 52 associations by consensus.

AKT1 by RN7SKP88 expression — PRAD

Box plot of AKT1 in RN7SKP88-low vs RN7SKP88-high samples in PRAD.

Explore this box plot interactively →

Exploration