RBM39

Across TCGA patient cohorts, RBM39 protein abundance is significantly associated with the RNA expression of many other genes, with 18,248 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible RBM39-associated genes across cancer lineages are USP21, CHTOP, and GTF3C4. Each is linked with RBM39 in more than 7 cancer types. Because this analysis shows association rather than direction, both RBM39-to-partner and partner-to-RBM39 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, RBM39 versus USP21 in LSCC, with a Pearson correlation of 0.57.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (RBM39→partner) and Y-score (partner→RBM39) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LSCC	USP21 →	+0.538	+0.205	<.001	<.001	3	8
LSCC	CHTOP →	+0.499	+0.218	<.001	<.001	3	8
LSCC	GTF3C4 →	+0.651	+0.207	<.001	<.001	3	7
LUAD	CLK2 →	+0.553	+0.139	<.001	<.001	3	7
GBM	ZNF74 →	+0.635	+0.213	<.001	<.001	3	7
HNSC	CAPN10-DT →	+0.450	+0.178	<.001	.002	3	7

Each partner links to its Q-omics profile. Showing the 6 strongest of 18,248 associations by consensus.

RBM39 vs USP21 — LSCC

Explore this scatter interactively →