RAVER2

Across TCGA cell cohorts, RAVER2 RNA expression is significantly associated with the go_rna of many other GO terms, with 5,193 significant associations in total. BONE shows the largest number of these associations.

The most reproducible RAVER2-associated GO terms across cancer lineages are Nuclear pore complex assembly, DNA strand elongation, and Nuclear pore organization. Each is linked with RAVER2 in more than 12 cancer types. Because this analysis shows association rather than direction, both RAVER2-to-partner and partner-to-RAVER2 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Nuclear pore complex assembly grouped by RAVER2-low versus RAVER2-high in BONE.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (RAVER2→partner) and Y-score (partner→RAVER2) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BONE	Nuclear pore complex assembly →	+0.195	+2.237	<.001	<.001	3	13
BONE	DNA strand elongation →	+0.215	+2.283	<.001	<.001	3	12
BONE	Nuclear pore organization →	+0.133	+1.467	<.001	<.001	3	12
BONE	Positive regulation of double-strand break repair via homologous recombination →	+0.075	+1.552	<.001	<.001	3	12
BONE	Transport along microtubule →	+0.047	+1.612	.001	<.001	3	12
PANCREAS	Cell cycle phase transition →	+0.075	+0.866	<.001	<.001	3	12

Each partner links to its Q-omics profile. Showing the 6 strongest of 5,193 associations by consensus.

Nuclear pore complex assembly by RAVER2 expression — BONE

Explore this box plot interactively →