Across TCGA patient cohorts, PTPRCAP protein abundance is significantly associated with the RNA expression of many other genes, with 13,349 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible PTPRCAP-associated genes across cancer lineages are AGAP2, IGKJ1, and LINC00426. Each is linked with PTPRCAP in more than 7 cancer types. Because this analysis shows association rather than direction, both PTPRCAP-to-partner and partner-to-PTPRCAP results are reported.

Each partner links to its own Q-omics profile.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (PTPRCAP→partner) and Y-score (partner→PTPRCAP) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
HNSC	AGAP2 →	+0.621	+0.534	<.001	<.001	3	8
CCRCC	IGKJ1 →	+2.527	+0.736	.003	.001	3	8
LSCC	LINC00426 →	+1.013	+0.871	<.001	<.001	3	8
UCEC	PCED1B-AS1 →	+0.984	+0.445	<.001	.005	3	8
LSCC	SP140 →	+1.161	+0.928	<.001	<.001	3	8
OV	GRAP2 →	+0.856	+0.925	<.001	.001	3	7

Each partner links to its Q-omics profile. Showing the 6 strongest of 13,349 associations by consensus.

Exploration

PTPRCAP survival (RNA) · tumor vs normal (RNA) · all PTPRCAP data types