PTCHD3

Across TCGA patient cohorts, PTCHD3 RNA expression is significantly associated with the RNA expression of many other genes, with 3,669 significant associations in total. COAD shows the largest number of these associations.

The most reproducible PTCHD3-associated genes across cancer lineages are CFAP61-AS1, TSPYL5, and NLRP12. Each is linked with PTCHD3 in more than 10 cancer types. Because this analysis shows association rather than direction, both PTCHD3-to-partner and partner-to-PTCHD3 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, PTCHD3 versus CFAP61-AS1 in SKCM, with a Pearson correlation of 0.29.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (PTCHD3→partner) and Y-score (partner→PTCHD3) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
SKCM	CFAP61-AS1 →	+0.690	+0.297	<.001	<.001	3	11
BLCA	TSPYL5 →	+0.982	+0.182	<.001	<.001	3	10
TGCT	NLRP12 →	+1.142	+0.165	<.001	.001	3	10
STAD	MX2 →	+0.659	+0.248	<.001	<.001	3	9
COAD	OSMR →	+0.787	+0.047	<.001	.001	3	9
HNSC	TP73-AS1 →	+0.563	+0.075	<.001	<.001	3	8

Each partner links to its Q-omics profile. Showing the 6 strongest of 3,669 associations by consensus.

PTCHD3 vs CFAP61-AS1 — SKCM

Explore this scatter interactively →