PSMD4

Across TCGA cell cohorts, PSMD4 mutation is significantly associated with the RNA expression of many other genes, with 2 significant associations in total. BLOOD_Leukemia shows the largest number of these associations.

The most reproducible PSMD4-associated genes across cancer lineages are IQCF5 and PNMA6F. Each is linked with PSMD4 in more than 1 cancer types. Because this analysis shows association rather than direction, both PSMD4-to-partner and partner-to-PSMD4 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, IQCF5 grouped by PSMD4-low versus PSMD4-high in BLOOD_Leukemia.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (PSMD4→partner) and Y-score (partner→PSMD4) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BLOOD_Leukemia	IQCF5 →	+0.124	+5.201	<.001	.006	3	1
LARGE_INTESTINE	PNMA6F →	+0.004	+4.415	<.001	.007	3	1

Each partner links to its Q-omics profile. Showing the 2 strongest of 2 associations by consensus.

IQCF5 by PSMD4 expression — BLOOD_Leukemia

Explore this box plot interactively →