PSMC4

protein abundance — cross-omics
Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, PSMC4 protein abundance is significantly associated with the RNA expression of many other genes, with 13,515 significant associations in total. COAD shows the largest number of these associations.

The most reproducible PSMC4-associated genes across cancer lineages are CSF3R, KLF2, and ELMO1. Each is linked with PSMC4 in more than 5 cancer types. Because this analysis shows association rather than direction, both PSMC4-to-partner and partner-to-PSMC4 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, PSMC4 versus CSF3R in COAD, with a Pearson correlation of -0.37.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (PSMC4→partner) and Y-score (partner→PSMC4) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
COADCSF3R →-1.056-0.161<.001<.00136
BRCAKLF2 →-0.840-0.141.003.00735
GBMELMO1 →-0.676-0.159<.001<.00135
COADLMOD1 →-1.251-0.149<.001<.00135
GBMIRAG1 →-1.176-0.189<.001<.00135
HNSCRBMS1P1 →-0.785-0.163.001.00235
Each partner links to its Q-omics profile. Showing the 6 strongest of 13,515 associations by consensus.

PSMC4 vs CSF3R — COAD

Per-sample scatter of PSMC4 vs CSF3R in COAD (Pearson r = -0.37).

Explore this scatter interactively →

Exploration