PGM2

Across TCGA cell cohorts, PGM2 mutation is significantly associated with the RNA expression of many other genes, with 7 significant associations in total. BLOOD_Leukemia shows the largest number of these associations.

The most reproducible PGM2-associated genes across cancer lineages are LCN1, NKX2-6, and KRTAP21-2. Each is linked with PGM2 in more than 1 cancer types. Because this analysis shows association rather than direction, both PGM2-to-partner and partner-to-PGM2 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, LCN1 grouped by PGM2-low versus PGM2-high in BLOOD_Leukemia.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (PGM2→partner) and Y-score (partner→PGM2) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BLOOD_Leukemia	LCN1 →	+0.057	+4.922	<.001	.009	3	1
BLOOD_Leukemia	NKX2-6 →	+0.663	+5.201	<.001	.006	3	1
BLOOD_Leukemia	KRTAP21-2 →	+0.085	+5.539	<.001	.003	3	1
BLOOD_Leukemia	FAM24A →	+0.082	+5.969	<.001	.001	3	1
BLOOD_Leukemia	IQCF5 →	+0.135	+5.201	<.001	.006	3	1
BLOOD_Leukemia	OC90 →	+0.013	+5.201	<.001	.006	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 7 associations by consensus.

LCN1 by PGM2 expression — BLOOD_Leukemia

Explore this box plot interactively →