PGBD2

RNA expression — cross-omics
Cross-omicsRNA → FUNCTION-RNACell-linePairwise association · TCGA cohorts

Across TCGA cell cohorts, PGBD2 RNA expression is significantly associated with the go_rna of many other GO terms, with 3,715 significant associations in total. SOFT_TISSUE shows the largest number of these associations.

The most reproducible PGBD2-associated GO terms across cancer lineages are Regulation of DNA repair, Positive regulation of DNA repair, and Positive regulation of DNA recombination. Each is linked with PGBD2 in more than 14 cancer types. Because this analysis shows association rather than direction, both PGBD2-to-partner and partner-to-PGBD2 results are reported.

Each partner links to its own Q-omics profile.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (PGBD2→partner) and Y-score (partner→PGBD2) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner GO termX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
BONERegulation of DNA repair →+0.072+0.620.001.001315
LARGE_INTESTINEPositive regulation of DNA repair →+0.061+0.828<.001<.001314
OVARYPositive regulation of DNA recombination →+0.076+0.882<.001<.001314
BONESubtelomeric heterochromatin formation →+0.109+0.606.007.001313
BONERegulation of transcription of nucleolar large rRNA by RNA polymerase I →+0.209+0.924<.001<.001312
SOFT_TISSUERegulation of chromatin organization →+0.060+0.521<.001<.001312
Each partner links to its Q-omics profile. Showing the 6 strongest of 3,715 associations by consensus.

Exploration