Across TCGA patient cohorts, PGAP1 RNA expression is significantly associated with the protein abundance of many other proteins, with 16,395 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible PGAP1-associated proteins across cancer lineages are MTA1, MTA1_S576, and PHC1_S664. Each is linked with PGAP1 in more than 4 cancer types. Because this analysis shows association rather than direction, both PGAP1-to-partner and partner-to-PGAP1 results are reported.

Each partner links to its own Q-omics profile.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (PGAP1→partner) and Y-score (partner→PGAP1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	MTA1 →	+0.350	+0.646	<.001	<.001	3	5
LSCC	MTA1_S576 →	+0.929	+1.206	<.001	<.001	3	5
HNSC	PHC1_S664 →	+0.641	+0.830	.001	<.001	3	5
GBM	SAE1 →	+0.267	+0.580	<.001	<.001	3	5
GBM	HNRNPLL →	+0.287	+1.021	<.001	<.001	3	5
LSCC	WRNIP1 →	+0.333	+0.720	<.001	.001	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest of 16,395 associations by consensus.

Exploration

PGAP1 survival (RNA) · tumor vs normal (RNA) · all PGAP1 data types