PCNPP1

Across TCGA patient cohorts, PCNPP1 RNA expression is significantly associated with the protein abundance of many other proteins, with 10,537 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible PCNPP1-associated proteins across cancer lineages are MED6, BRD7_S279, and BUB3. Each is linked with PCNPP1 in more than 4 cancer types. Because this analysis shows association rather than direction, both PCNPP1-to-partner and partner-to-PCNPP1 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, PCNPP1 versus MED6 in COAD, with a Pearson correlation of 0.47.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (PCNPP1→partner) and Y-score (partner→PCNPP1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
COAD	MED6 →	+0.479	+0.516	.002	.001	3	5
GBM	BRD7_S279 →	+0.499	+0.401	.001	<.001	3	4
GBM	BUB3 →	+0.298	+0.317	.001	.002	3	4
LUAD	CNOT3_S299 →	+0.484	+0.424	<.001	<.001	3	4
GBM	DDX42 →	+0.262	+0.351	.001	.001	3	4
LSCC	DHX9 →	+0.252	+0.536	<.001	<.001	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest of 10,537 associations by consensus.

PCNPP1 vs MED6 — COAD

Explore this scatter interactively →