PCDHB3

Across TCGA patient cohorts, PCDHB3 protein abundance is significantly associated with the RNA expression of many other genes, with 2,334 significant associations in total. GBM shows the largest number of these associations.

The most reproducible PCDHB3-associated genes across cancer lineages are LINC00663, PKP2, and YTHDF1. Each is linked with PCDHB3 in more than 2 cancer types. Because this analysis shows association rather than direction, both PCDHB3-to-partner and partner-to-PCDHB3 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, PCDHB3 versus LINC00663 in OV, with a Pearson correlation of 0.79.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (PCDHB3→partner) and Y-score (partner→PCDHB3) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
OV	LINC00663 →	+0.797	+0.752	.003	.009	3	2
OV	PKP2 →	+1.867	+0.752	.005	.009	3	2
GBM	YTHDF1 →	+0.515	+1.585	.001	.001	3	2
UCEC	RNA5SP122 →	+1.180	+1.078	.005	.008	3	2
OV	DNAH6 →	+1.400	+0.719	.009	.004	3	1
OV	ZNHIT6 →	+0.472	+0.752	<.001	.009	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 2,334 associations by consensus.

PCDHB3 vs LINC00663 — OV

Explore this scatter interactively →