PACSIN3

protein abundance — cross-omics
Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, PACSIN3 protein abundance is significantly associated with the RNA expression of many other genes, with 8,729 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible PACSIN3-associated genes across cancer lineages are DOK3, CFL2, and DMD. Each is linked with PACSIN3 in more than 3 cancer types. Because this analysis shows association rather than direction, both PACSIN3-to-partner and partner-to-PACSIN3 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, PACSIN3 versus DOK3 in LSCC, with a Pearson correlation of -0.34.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (PACSIN3→partner) and Y-score (partner→PACSIN3) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LSCCDOK3 →-0.653-0.427<.001<.00134
HNSCCFL2 →+1.150+0.914<.001<.00134
HNSCDMD →+1.341+0.726<.001<.00134
LUADIL17RE →+0.890+0.378.001.00134
HNSCCRYAB →+1.851+0.792<.001<.00133
CCRCCMYCT1 →+0.940+0.379<.001<.00133
Each partner links to its Q-omics profile. Showing the 6 strongest of 8,729 associations by consensus.

PACSIN3 vs DOK3 — LSCC

Per-sample scatter of PACSIN3 vs DOK3 in LSCC (Pearson r = -0.34).

Explore this scatter interactively →

Exploration