NLGN1

Across TCGA patient cohorts, NLGN1 mutation is significantly associated with the RNA expression of many other genes, with 6,660 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible NLGN1-associated genes across cancer lineages are SLC25A17, PHF5A, and LSM5. Each is linked with NLGN1 in more than 3 cancer types. Because this analysis shows association rather than direction, both NLGN1-to-partner and partner-to-NLGN1 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, SLC25A17 grouped by NLGN1-low versus NLGN1-high in UCEC.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (NLGN1→partner) and Y-score (partner→NLGN1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UCEC	SLC25A17 →	+0.411	+2.098	<.001	<.001	3	4
UCEC	PHF5A →	+0.580	+2.887	<.001	<.001	3	4
LUAD	LSM5 →	+0.320	+3.584	.008	.002	3	4
CESC	RN7SL134P →	+0.079	+2.704	.001	.008	3	4
LUAD	METTL5 →	+0.462	+3.712	<.001	<.001	3	4
UCEC	ABHD3 →	+0.536	+1.885	<.001	<.001	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,660 associations by consensus.

SLC25A17 by NLGN1 expression — UCEC

Explore this box plot interactively →