NIPSNAP3A

Across TCGA patient cohorts, NIPSNAP3A protein abundance is significantly associated with the RNA expression of many other genes, with 9,116 significant associations in total. COAD shows the largest number of these associations.

The most reproducible NIPSNAP3A-associated genes across cancer lineages are PRMT1, STX7, and FAM241A. Each is linked with NIPSNAP3A in more than 3 cancer types. Because this analysis shows association rather than direction, both NIPSNAP3A-to-partner and partner-to-NIPSNAP3A results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, NIPSNAP3A versus PRMT1 in COAD, with a Pearson correlation of -0.37.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (NIPSNAP3A→partner) and Y-score (partner→NIPSNAP3A) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
COAD	PRMT1 →	-0.472	-0.535	.001	<.001	3	4
GBM	STX7 →	+0.444	+0.604	.002	.003	3	4
BRCA	FAM241A →	+0.705	+0.393	.001	.002	3	4
COAD	WDR18 →	-0.655	-0.566	<.001	<.001	3	4
LUAD	CDCA3 →	-0.785	-0.287	<.001	<.001	3	3
UCEC	PIF1 →	-0.603	-0.428	.007	.006	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest of 9,116 associations by consensus.

NIPSNAP3A vs PRMT1 — COAD

Explore this scatter interactively →