NHS

mutation — cross-omics
Cross-omicsMUTATION → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, NHS mutation is significantly associated with the RNA expression of many other genes, with 5,980 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible NHS-associated genes across cancer lineages are ZFYVE19, RAB8A, and RBPJ. Each is linked with NHS in more than 3 cancer types. Because this analysis shows association rather than direction, both NHS-to-partner and partner-to-NHS results are reported.

Each partner links to its own Q-omics profile.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (NHS→partner) and Y-score (partner→NHS) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
UCECZFYVE19 →+0.327+1.243<.001<.00134
UCECRAB8A →+0.226+1.358.002<.00134
COADRBPJ →+0.370+3.183.007.00934
UCECPGAM1 →+0.637+1.610<.001<.00134
UCECZIC2 →+1.238+1.254<.001<.00134
COADZIC5 →+0.890+2.415.002.00334
Each partner links to its Q-omics profile. Showing the 6 strongest of 5,980 associations by consensus.

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