NAIP

Across TCGA pan-cancer cohorts, NAIP mass-spec protein is linked to patient survival in 6 of 34 cancer types, making it a survival-associated NAIP data layer compared with 17 for mass-spec protein and 3 for mutation status.

The strongest signal is observed in clear cell renal cell carcinoma (CCRCC), where higher NAIP mass-spec protein is associated with worse disease-free survival. In most high-consensus cancer types, elevated NAIP expression acts as an unfavorable survival marker, although some lineages such as HNSC and LSCC show a favorable association.

CCRCC, HNSC, and GBM are the cancer types where NAIP mass-spec protein most reproducibly stratifies survival.

mass-spec protein survival associations by lineage

Ranked by sampling consensus. AUC1 and AUC2 indicate survival in the high- and low-expression groups, respectively; the lower AUC marks the poorer-surviving group. p-values are from the log-rank test.

Lineage	Measure	Split	Stage	AUC1 high	AUC2 low	p	Sampling consensus
CCRCC	DFS	Median	II,III,IV	0.451	1.000	.008	32	view →
HNSC	OS	Tertile	All	0.942	0.754	.014	14	view →
GBM	OS	Tertile	All	0.362	0.683	.004	12	view →
LSCC	DFS	Quartile	II,III,IV	1.000	0.200	.024	4	view →
PDAC	DFS	Median	IV	0.934	0.250	.024	3	view →
LUAD	DFS	Quartile	All	0.793	0.460	.038	3	view →

Pink = unfavorable, green = favorable. Showing the 6 strongest of 6 lineages.

NAIP–CCRCC (DFS)

Open the CCRCC breakdown →