MSL2

Across TCGA patient cohorts, MSL2 RNA expression is significantly associated with the protein abundance of many other proteins, with 18,958 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible MSL2-associated proteins across cancer lineages are SMC1A, GATAD2B, and HCFC1. Each is linked with MSL2 in more than 8 cancer types. Because this analysis shows association rather than direction, both MSL2-to-partner and partner-to-MSL2 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, MSL2 versus SMC1A in GBM, with a Pearson correlation of 0.54.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (MSL2→partner) and Y-score (partner→MSL2) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	SMC1A →	+0.234	+0.221	<.001	<.001	3	9
GBM	GATAD2B →	+0.314	+0.372	<.001	<.001	3	8
PDAC	HCFC1 →	+0.221	+0.364	<.001	<.001	3	8
LSCC	HMCES →	+0.640	+0.719	<.001	<.001	3	8
GBM	PRPF4 →	+0.334	+0.345	<.001	<.001	3	7
GBM	ACIN1 →	+0.356	+0.324	<.001	<.001	3	7

Each partner links to its Q-omics profile. Showing the 6 strongest of 18,958 associations by consensus.

MSL2 vs SMC1A — GBM

Explore this scatter interactively →