MICA

protein abundance — cross-omics
Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, MICA protein abundance is significantly associated with the RNA expression of many other genes, with 520 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible MICA-associated genes across cancer lineages are HIRA, GZMH, and GZMB. Each is linked with MICA in more than 1 cancer types. Because this analysis shows association rather than direction, both MICA-to-partner and partner-to-MICA results are reported.

Each partner links to its own Q-omics profile.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (MICA→partner) and Y-score (partner→MICA) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LSCCHIRA →+0.526+0.794<.001.00331
LSCCGZMH →-1.114-0.843.001.00231
LSCCGZMB →-1.214-0.793.001.00431
LSCCPFDN4 →+0.688+0.890.001<.00131
LSCCPRPF6 →+0.527+0.699.004.00231
LSCCPRELID3B →+0.728+0.771.006.00331
Each partner links to its Q-omics profile. Showing the 6 strongest of 520 associations by consensus.

Exploration