LYSMD3

Across TCGA cell cohorts, LYSMD3 RNA expression is significantly associated with the go_rna of many other GO terms, with 4,866 significant associations in total. BONE shows the largest number of these associations.

The most reproducible LYSMD3-associated GO terms across cancer lineages are Golgi vesicle transport, Macroautophagy, and Endoplasmic reticulum to Golgi vesicle-mediated transport. Each is linked with LYSMD3 in more than 14 cancer types. Because this analysis shows association rather than direction, both LYSMD3-to-partner and partner-to-LYSMD3 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Golgi vesicle transport grouped by LYSMD3-low versus LYSMD3-high in OESOPHAGUS.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LYSMD3→partner) and Y-score (partner→LYSMD3) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
OESOPHAGUS	Golgi vesicle transport →	+0.064	+0.528	.002	.003	3	15
SKIN	Macroautophagy →	+0.054	+0.633	<.001	<.001	3	15
LIVER	Endoplasmic reticulum to Golgi vesicle-mediated transport →	+0.087	+0.942	<.001	.001	3	14
BONE	Vesicle cargo loading →	+0.137	+0.944	<.001	<.001	3	14
OESOPHAGUS	Regulation of protein exit from endoplasmic reticulum →	+0.155	+0.988	<.001	<.001	3	14
OESOPHAGUS	Positive regulation of protein exit from endoplasmic reticulum →	+0.161	+0.768	<.001	.008	3	14

Each partner links to its Q-omics profile. Showing the 6 strongest of 4,866 associations by consensus.

Golgi vesicle transport by LYSMD3 expression — OESOPHAGUS

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