LYSMD2

Across TCGA cell cohorts, LYSMD2 RNA expression is significantly associated with the go_rna of many other GO terms, with 4,011 significant associations in total. BONE shows the largest number of these associations.

The most reproducible LYSMD2-associated GO terms across cancer lineages are Intracellular magnesium ion homeostasis, Circadian sleep/wake cycle, and Regulation of non-canonical NF-kappaB signal transduction. Each is linked with LYSMD2 in more than 8 cancer types. Because this analysis shows association rather than direction, both LYSMD2-to-partner and partner-to-LYSMD2 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Intracellular magnesium ion homeostasis grouped by LYSMD2-low versus LYSMD2-high in STOMACH.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LYSMD2→partner) and Y-score (partner→LYSMD2) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STOMACH	Intracellular magnesium ion homeostasis →	+0.146	+1.522	.004	.002	3	9
LIVER	Circadian sleep/wake cycle →	+0.175	+1.448	.002	.005	3	8
BLOOD_Lymphoma	Regulation of non-canonical NF-kappaB signal transduction →	+0.086	+1.640	<.001	<.001	3	7
CNS	Skeletal muscle atrophy →	+0.675	+0.987	.001	<.001	3	6
CNS	Pattern recognition receptor signaling pathway →	+0.045	+0.799	<.001	.001	3	6
CNS	Cytoplasmic pattern recognition receptor signaling pathway →	+0.055	+0.799	.001	.001	3	6

Each partner links to its Q-omics profile. Showing the 6 strongest of 4,011 associations by consensus.

Intracellular magnesium ion homeostasis by LYSMD2 expression — STOMACH

Explore this box plot interactively →