LNCPRESS2

Across TCGA patient cohorts, LNCPRESS2 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,009 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LNCPRESS2-associated GO terms across cancer lineages are Polyprenol metabolic process, N-terminal protein amino acid modification, and Activin receptor signaling pathway. Each is linked with LNCPRESS2 in more than 4 cancer types. Because this analysis shows association rather than direction, both LNCPRESS2-to-partner and partner-to-LNCPRESS2 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Polyprenol metabolic process grouped by LNCPRESS2-low versus LNCPRESS2-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LNCPRESS2→partner) and Y-score (partner→LNCPRESS2) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Polyprenol metabolic process →	+0.076	+0.027	<.001	.002	3	5
STAD	N-terminal protein amino acid modification →	+0.090	+0.034	<.001	<.001	3	4
STAD	Activin receptor signaling pathway →	+0.057	+0.030	<.001	<.001	3	4
STAD	mRNA pseudouridine synthesis →	+0.077	+0.056	<.001	<.001	3	4
STAD	Negative regulation of extrinsic apoptotic signaling pathway →	+0.097	+0.036	<.001	<.001	3	4
STAD	Negative regulation of DNA metabolic process →	+0.082	+0.063	<.001	<.001	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,009 associations by consensus.

Polyprenol metabolic process by LNCPRESS2 expression — STAD

Explore this box plot interactively →