LINC02564

Across TCGA patient cohorts, LINC02564 RNA expression is significantly associated with the go_rna of many other GO terms, with 1,646 significant associations in total. TGCT shows the largest number of these associations.

The most reproducible LINC02564-associated GO terms across cancer lineages are Negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, Ribose phosphate biosynthetic process, and Regulation of mitochondrial gene expression. Each is linked with LINC02564 in more than 3 cancer types. Because this analysis shows association rather than direction, both LINC02564-to-partner and partner-to-LINC02564 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay grouped by LINC02564-low versus LINC02564-high in LAML.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC02564→partner) and Y-score (partner→LINC02564) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LAML	Negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay →	+0.050	+0.027	.007	.001	3	3
CESC	Ribose phosphate biosynthetic process →	+0.021	+0.009	<.001	<.001	3	3
TGCT	Regulation of mitochondrial gene expression →	+0.029	+0.120	<.001	<.001	3	3
TGCT	Recombinational repair →	+0.019	+0.076	<.001	.001	3	3
BRCA	Pyrimidine nucleobase biosynthetic process →	+0.021	+0.007	.008	.001	3	3
TGCT	mRNA 3'-end processing →	+0.032	+0.103	<.001	<.001	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest of 1,646 associations by consensus.

Negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay by LINC02564 expression — LAML

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