LINC02560

Across TCGA patient cohorts, LINC02560 RNA expression is significantly associated with the RNA expression of many other genes, with 11,419 significant associations in total. ESCA shows the largest number of these associations.

The most reproducible LINC02560-associated genes across cancer lineages are RNF225, PIP5KL1, and RAPGEFL1. Each is linked with LINC02560 in more than 25 cancer types. Because this analysis shows association rather than direction, both LINC02560-to-partner and partner-to-LINC02560 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC02560 versus RNF225 in ESCA, with a Pearson correlation of 0.94.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC02560→partner) and Y-score (partner→LINC02560) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
ESCA	RNF225 →	+2.666	+2.927	<.001	<.001	3	26
UCS	PIP5KL1 →	+1.073	+1.217	.002	.002	2	25
BLCA	RAPGEFL1 →	+1.559	+1.450	<.001	<.001	3	23
ESCA	NKPD1 →	+1.057	+2.092	<.001	<.001	3	22
UCS	LMTK3 →	+0.874	+0.816	.003	.001	1	23
THCA	CST6 →	+2.861	+1.701	<.001	<.001	3	20

Each partner links to its Q-omics profile. Showing the 6 strongest of 11,419 associations by consensus.

LINC02560 vs RNF225 — ESCA

Explore this scatter interactively →