LINC02556

Across TCGA patient cohorts, LINC02556 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,646 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC02556-associated GO terms across cancer lineages are Regulation of nuclear-transcribed mRNA poly(A) tail shortening, Vesicle-mediated transport to the plasma membrane, and Obsolete ncRNA catabolic process. Each is linked with LINC02556 in more than 19 cancer types. Because this analysis shows association rather than direction, both LINC02556-to-partner and partner-to-LINC02556 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Regulation of nuclear-transcribed mRNA poly(A) tail shortening grouped by LINC02556-low versus LINC02556-high in ESCA.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC02556→partner) and Y-score (partner→LINC02556) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
ESCA	Regulation of nuclear-transcribed mRNA poly(A) tail shortening →	+0.075	+0.307	<.001	<.001	3	20
STAD	Vesicle-mediated transport to the plasma membrane →	+0.058	+0.232	<.001	<.001	3	19
STAD	Obsolete ncRNA catabolic process →	+0.052	+0.230	<.001	<.001	3	19
STAD	Epigenetic regulation of gene expression →	+0.057	+0.244	<.001	<.001	3	19
STAD	Phosphatidylinositol metabolic process →	+0.050	+0.220	<.001	<.001	3	18
ESCA	Histone mRNA metabolic process →	+0.064	+0.258	<.001	<.001	3	18

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,646 associations by consensus.

Regulation of nuclear-transcribed mRNA poly(A) tail shortening by LINC02556 expression — ESCA

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