LINC02540

Across TCGA patient cohorts, LINC02540 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,079 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC02540-associated GO terms across cancer lineages are Negative regulation of small molecule metabolic process, Fatty acid beta-oxidation, and Regulation of morphogenesis of an epithelium. Each is linked with LINC02540 in more than 5 cancer types. Because this analysis shows association rather than direction, both LINC02540-to-partner and partner-to-LINC02540 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Negative regulation of small molecule metabolic process grouped by LINC02540-low versus LINC02540-high in ESCA.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC02540→partner) and Y-score (partner→LINC02540) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
ESCA	Negative regulation of small molecule metabolic process →	+0.073	+0.096	<.001	.004	3	6
STAD	Fatty acid beta-oxidation →	+0.091	+0.087	<.001	<.001	3	6
ESCA	Regulation of morphogenesis of an epithelium →	+0.074	+0.093	<.001	.005	3	6
STAD	Aerobic respiration →	+0.137	+0.097	<.001	<.001	3	6
STAD	Regulation of cellular respiration →	+0.093	+0.088	<.001	<.001	3	6
STAD	Phosphatidylethanolamine biosynthetic process →	+0.075	+0.093	<.001	<.001	3	6

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,079 associations by consensus.

Negative regulation of small molecule metabolic process by LINC02540 expression — ESCA

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