LINC02539

Across TCGA patient cohorts, LINC02539 RNA expression is significantly associated with the protein abundance of many other proteins, with 9,363 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible LINC02539-associated proteins across cancer lineages are GBP1, GBP5, and WAS. Each is linked with LINC02539 in more than 6 cancer types. Because this analysis shows association rather than direction, both LINC02539-to-partner and partner-to-LINC02539 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC02539 versus GBP1 in UCEC, with a Pearson correlation of 0.36.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC02539→partner) and Y-score (partner→LINC02539) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UCEC	GBP1 →	+0.786	+0.565	<.001	.002	3	7
BRCA	GBP5 →	+0.813	+0.185	<.001	<.001	3	7
UCEC	WAS →	+0.431	+0.443	<.001	<.001	3	6
LSCC	FMNL1 →	+0.581	+0.349	<.001	<.001	3	6
LSCC	FYB1 →	+0.475	+0.231	<.001	<.001	3	6
OV	TRPM2_S38 →	+0.830	+0.186	.002	.002	3	6

Each partner links to its Q-omics profile. Showing the 6 strongest of 9,363 associations by consensus.

LINC02539 vs GBP1 — UCEC

Explore this scatter interactively →