LINC02509

Across TCGA patient cohorts, LINC02509 RNA expression is significantly associated with the go_rna of many other GO terms, with 3,885 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC02509-associated GO terms across cancer lineages are Positive regulation of protein modification by small protein conjugation or removal, Regulation of cyclin-dependent protein kinase activity, and Membrane biogenesis. Each is linked with LINC02509 in more than 4 cancer types. Because this analysis shows association rather than direction, both LINC02509-to-partner and partner-to-LINC02509 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Positive regulation of protein modification by small protein conjugation or removal grouped by LINC02509-low versus LINC02509-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC02509→partner) and Y-score (partner→LINC02509) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Positive regulation of protein modification by small protein conjugation or removal →	+0.140	+0.015	<.001	.004	3	5
STAD	Regulation of cyclin-dependent protein kinase activity →	+0.121	+0.015	<.001	.004	3	4
STAD	Membrane biogenesis →	+0.121	+0.023	<.001	.003	3	4
STAD	Negative regulation of mRNA metabolic process →	+0.137	+0.024	<.001	.001	3	4
STAD	Regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay →	+0.131	+0.023	<.001	.001	3	4
STAD	Positive regulation of intracellular transport →	+0.142	+0.023	<.001	.002	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest of 3,885 associations by consensus.

Positive regulation of protein modification by small protein conjugation or removal by LINC02509 expression — STAD

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