LINC02409

Across TCGA patient cohorts, LINC02409 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,911 significant associations in total. THCA shows the largest number of these associations.

The most reproducible LINC02409-associated GO terms across cancer lineages are Cellular response to retinoic acid, Neural tube development, and Positive regulation of Wnt signaling pathway. Each is linked with LINC02409 in more than 10 cancer types. Because this analysis shows association rather than direction, both LINC02409-to-partner and partner-to-LINC02409 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Cellular response to retinoic acid grouped by LINC02409-low versus LINC02409-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC02409→partner) and Y-score (partner→LINC02409) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Cellular response to retinoic acid →	+0.068	+0.059	<.001	<.001	3	11
STAD	Neural tube development →	+0.093	+0.103	<.001	<.001	3	11
STAD	Positive regulation of Wnt signaling pathway →	+0.088	+0.096	<.001	.005	3	11
STAD	Endocrine pancreas development →	+0.072	+0.065	<.001	<.001	3	11
STAD	Mannosylation →	+0.071	+0.064	<.001	<.001	3	10
STAD	Autophagosome organization →	+0.102	+0.060	<.001	<.001	3	10

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,911 associations by consensus.

Cellular response to retinoic acid by LINC02409 expression — STAD

Explore this box plot interactively →